MOLGENIS
Open-source infrastructure to find, capture, exchange, manage, and analyse research data
Data Management Platform
Model, capture, and manage your data. Quickly upload data files, or enter data via user friendly forms. Refine your data model dynamically using MOLGENIS advanced 'object-relational' data definition format and the online metadata editor. Examples:
Catalogue
Based on the EMX2 platform, MOLGENIS provides various health research FAIR data catalogues to increase discoverability and accelerate reuse of data and samples. Examples:- European health data and sample network catalogue
- European directory of biobank collections (BBMRI-ERIC)
- LifeLines request portal of data and materials
- Dutch catalogue of human data and sample collections (BBMRI-NL)
- Catalogue of rare disease samples (RD-Connect)
- Dutch catalogue of pathology samples (PALGA)
Patient portals and registries
Share patient, mutation and disease knowledge to understand relations between genetics, environment and disease. Examples:- Deb-central: patient registry for Epidermolosis Bullosa
- International registry of Microvillus Inclusion Disease (MVID) patients and associated MYO5B, STX3 and STXBP2 mutations
- Arrhythmogenic Right Ventricular Dysplasia/Cardiomyopathy (ARVD/C) Genetic Variants Database
- Open-access database on CHD7 mutations
Variant Interpretation Pipeline
VIP is a flexible human variant interpretation pipeline for rare disease using state-of-the-art pathogenicity prediction (CAPICE) and template-based interactive reporting to facilitate decision support. More info: https://molgenis.github.io/vip/Armadillo
Armadillo is a data portal that allows data stewards to share datasets on a server, and researchers to analyse these data and those shared on other servers using the DataSHIELD analysis tools. More info: https://molgenis.github.io/molgenis-service-armadillo/
