EMX2 Data Management Platform

Model, capture, and manage your data. Quickly upload data files, or enter data via user friendly forms. Refine your data model dynamically using MOLGENIS advanced 'object-relational' data definition format and the online metadata editor.
Example: https://directory.bbmri-eric.eu

Catalogue

Based on the EMX2 platform, MOLGENIS provides various health research FAIR data catalogues to increase discoverability and accelerate reuse of data and samples.
Example: https://data-catalogue.molgeniscloud.org/ and https://umcgresearchdatacatalogue.nl

Patient portals and registries

Share patient, mutation and disease knowledge to understand relations between genetics, environment and disease. Example https://genturis-registry.eu

Variant Interpretation Pipeline

VIP is a flexible human variant interpretation pipeline for rare disease using state-of-the-art pathogenicity prediction (CAPICE) and template-based interactive reporting to facilitate decision support. More info: https://molgenis.github.io/vip/

Armadillo

Armadillo is a data portal that allows data stewards to share datasets on a server, and researchers to analyse these data and those shared on other servers using the DataSHIELD analysis tools. More info: https://molgenis.github.io/molgenis-service-armadillo/

High performance computing

Easily schedule large scale analysis jobs on a computer cluster. MOLGENIS does also provide a high performance computing framework. We call it simply 'compute' and it uses simple spreadsheets to define workflows, and templates to define workflow steps. It works on PBS and SLURM.